Cortex Skeleton

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Compute Cortical Fold Graph Upgrade From Old
Cortical Fold Graph (3.1+)
Cortical Fold Graph Upgrade Structure
Cortical Folds Graph
Folds graph over-segmentation
Graph Structure (3.0)
Graph Structure (3.1)
Hemisphere Cortical Folds Graph
Hemisphere Pial Mesh
Hemisphere Sulci Skeleton
Pial Mesh
Sulci recognition with Deep CNN
Sulci Skeleton
{Viewer} Cortex Skeleton

Associated formats

Aperio svs
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
Zeiss czi

Associated ontology rules

  • brainvisa-3.2.0 :
    • {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/segmentation/left/skeleton_<side>_<subject>
    {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/segmentation/right/skeleton_<side>_<subject>

    Key attributes

  • brainvisa-3.0 :
    • protocol ,  subject ,  filename_variable ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis
  • brainvisa-3.2.0 :
    • time_duration ,  time_point ,  rescan ,  mapped ,  acquisition_date ,  contrast ,  center ,  subject ,  acquisition ,  analysis ,  side
  • morphologist-bids-1.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  acquisition ,  analysis
  • morphologist-bids-2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  bids ,  analysis